Staging
v0.7.0
v0.7.0
Revision cb99a34e23e32ca8e94bafaa9699cfd133a17fd3 authored by Derrick Stolee on 24 October 2019, 13:40:42 UTC, committed by Junio C Hamano on 25 October 2019, 02:19:16 UTC
The previous commit includes a failing test for an issue around fetch.writeCommitGraph and fetching in a repo with a submodule. Here, we fix that bug and set the test to "test_expect_success". The problem arises with this set of commands when the remote repo at <url> has a submodule. Note that --recurse-submodules is not needed to demonstrate the bug. $ git clone <url> test $ cd test $ git -c fetch.writeCommitGraph=true fetch origin Computing commit graph generation numbers: 100% (12/12), done. BUG: commit-graph.c:886: missing parent <hash1> for commit <hash2> Aborted (core dumped) As an initial fix, I converted the code in builtin/fetch.c that calls write_commit_graph_reachable() to instead launch a "git commit-graph write --reachable --split" process. That code worked, but is not how we want the feature to work long-term. That test did demonstrate that the issue must be something to do with internal state of the 'git fetch' process. The write_commit_graph() method in commit-graph.c ensures the commits we plan to write are "closed under reachability" using close_reachable(). This method walks from the input commits, and uses the UNINTERESTING flag to mark which commits have already been visited. This allows the walk to take O(N) time, where N is the number of commits, instead of O(P) time, where P is the number of paths. (The number of paths can be exponential in the number of commits.) However, the UNINTERESTING flag is used in lots of places in the codebase. This flag usually means some barrier to stop a commit walk, such as in revision-walking to compare histories. It is not often cleared after the walk completes because the starting points of those walks do not have the UNINTERESTING flag, and clear_commit_marks() would stop immediately. This is happening during a 'git fetch' call with a remote. The fetch negotiation is comparing the remote refs with the local refs and marking some commits as UNINTERESTING. I tested running clear_commit_marks_many() to clear the UNINTERESTING flag inside close_reachable(), but the tips did not have the flag, so that did nothing. It turns out that the calculate_changed_submodule_paths() method is at fault. Thanks, Peff, for pointing out this detail! More specifically, for each submodule, the collect_changed_submodules() runs a revision walk to essentially do file-history on the list of submodules. That revision walk marks commits UNININTERESTING if they are simplified away by not changing the submodule. Instead, I finally arrived on the conclusion that I should use a flag that is not used in any other part of the code. In commit-reach.c, a number of flags were defined for commit walk algorithms. The REACHABLE flag seemed like it made the most sense, and it seems it was not actually used in the file. The REACHABLE flag was used in early versions of commit-reach.c, but was removed by 4fbcca4 (commit-reach: make can_all_from_reach... linear, 2018-07-20). Add the REACHABLE flag to commit-graph.c and use it instead of UNINTERESTING in close_reachable(). This fixes the bug in manual testing. Reported-by: Johannes Schindelin <johannes.schindelin@gmx.de> Helped-by: Jeff King <peff@peff.net> Helped-by: Szeder Gábor <szeder.dev@gmail.com> Signed-off-by: Derrick Stolee <dstolee@microsoft.com> Signed-off-by: Junio C Hamano <gitster@pobox.com>
1 parent e88aab9
pack-write.c
#include "cache.h"
#include "pack.h"
#include "csum-file.h"
void reset_pack_idx_option(struct pack_idx_option *opts)
{
memset(opts, 0, sizeof(*opts));
opts->version = 2;
opts->off32_limit = 0x7fffffff;
}
static int sha1_compare(const void *_a, const void *_b)
{
struct pack_idx_entry *a = *(struct pack_idx_entry **)_a;
struct pack_idx_entry *b = *(struct pack_idx_entry **)_b;
return oidcmp(&a->oid, &b->oid);
}
static int cmp_uint32(const void *a_, const void *b_)
{
uint32_t a = *((uint32_t *)a_);
uint32_t b = *((uint32_t *)b_);
return (a < b) ? -1 : (a != b);
}
static int need_large_offset(off_t offset, const struct pack_idx_option *opts)
{
uint32_t ofsval;
if ((offset >> 31) || (opts->off32_limit < offset))
return 1;
if (!opts->anomaly_nr)
return 0;
ofsval = offset;
return !!bsearch(&ofsval, opts->anomaly, opts->anomaly_nr,
sizeof(ofsval), cmp_uint32);
}
/*
* On entry *sha1 contains the pack content SHA1 hash, on exit it is
* the SHA1 hash of sorted object names. The objects array passed in
* will be sorted by SHA1 on exit.
*/
const char *write_idx_file(const char *index_name, struct pack_idx_entry **objects,
int nr_objects, const struct pack_idx_option *opts,
const unsigned char *sha1)
{
struct hashfile *f;
struct pack_idx_entry **sorted_by_sha, **list, **last;
off_t last_obj_offset = 0;
uint32_t array[256];
int i, fd;
uint32_t index_version;
if (nr_objects) {
sorted_by_sha = objects;
list = sorted_by_sha;
last = sorted_by_sha + nr_objects;
for (i = 0; i < nr_objects; ++i) {
if (objects[i]->offset > last_obj_offset)
last_obj_offset = objects[i]->offset;
}
QSORT(sorted_by_sha, nr_objects, sha1_compare);
}
else
sorted_by_sha = list = last = NULL;
if (opts->flags & WRITE_IDX_VERIFY) {
assert(index_name);
f = hashfd_check(index_name);
} else {
if (!index_name) {
struct strbuf tmp_file = STRBUF_INIT;
fd = odb_mkstemp(&tmp_file, "pack/tmp_idx_XXXXXX");
index_name = strbuf_detach(&tmp_file, NULL);
} else {
unlink(index_name);
fd = open(index_name, O_CREAT|O_EXCL|O_WRONLY, 0600);
if (fd < 0)
die_errno("unable to create '%s'", index_name);
}
f = hashfd(fd, index_name);
}
/* if last object's offset is >= 2^31 we should use index V2 */
index_version = need_large_offset(last_obj_offset, opts) ? 2 : opts->version;
/* index versions 2 and above need a header */
if (index_version >= 2) {
struct pack_idx_header hdr;
hdr.idx_signature = htonl(PACK_IDX_SIGNATURE);
hdr.idx_version = htonl(index_version);
hashwrite(f, &hdr, sizeof(hdr));
}
/*
* Write the first-level table (the list is sorted,
* but we use a 256-entry lookup to be able to avoid
* having to do eight extra binary search iterations).
*/
for (i = 0; i < 256; i++) {
struct pack_idx_entry **next = list;
while (next < last) {
struct pack_idx_entry *obj = *next;
if (obj->oid.hash[0] != i)
break;
next++;
}
array[i] = htonl(next - sorted_by_sha);
list = next;
}
hashwrite(f, array, 256 * 4);
/*
* Write the actual SHA1 entries..
*/
list = sorted_by_sha;
for (i = 0; i < nr_objects; i++) {
struct pack_idx_entry *obj = *list++;
if (index_version < 2) {
uint32_t offset = htonl(obj->offset);
hashwrite(f, &offset, 4);
}
hashwrite(f, obj->oid.hash, the_hash_algo->rawsz);
if ((opts->flags & WRITE_IDX_STRICT) &&
(i && oideq(&list[-2]->oid, &obj->oid)))
die("The same object %s appears twice in the pack",
oid_to_hex(&obj->oid));
}
if (index_version >= 2) {
unsigned int nr_large_offset = 0;
/* write the crc32 table */
list = sorted_by_sha;
for (i = 0; i < nr_objects; i++) {
struct pack_idx_entry *obj = *list++;
uint32_t crc32_val = htonl(obj->crc32);
hashwrite(f, &crc32_val, 4);
}
/* write the 32-bit offset table */
list = sorted_by_sha;
for (i = 0; i < nr_objects; i++) {
struct pack_idx_entry *obj = *list++;
uint32_t offset;
offset = (need_large_offset(obj->offset, opts)
? (0x80000000 | nr_large_offset++)
: obj->offset);
offset = htonl(offset);
hashwrite(f, &offset, 4);
}
/* write the large offset table */
list = sorted_by_sha;
while (nr_large_offset) {
struct pack_idx_entry *obj = *list++;
uint64_t offset = obj->offset;
uint32_t split[2];
if (!need_large_offset(offset, opts))
continue;
split[0] = htonl(offset >> 32);
split[1] = htonl(offset & 0xffffffff);
hashwrite(f, split, 8);
nr_large_offset--;
}
}
hashwrite(f, sha1, the_hash_algo->rawsz);
finalize_hashfile(f, NULL, CSUM_HASH_IN_STREAM | CSUM_CLOSE |
((opts->flags & WRITE_IDX_VERIFY)
? 0 : CSUM_FSYNC));
return index_name;
}
off_t write_pack_header(struct hashfile *f, uint32_t nr_entries)
{
struct pack_header hdr;
hdr.hdr_signature = htonl(PACK_SIGNATURE);
hdr.hdr_version = htonl(PACK_VERSION);
hdr.hdr_entries = htonl(nr_entries);
hashwrite(f, &hdr, sizeof(hdr));
return sizeof(hdr);
}
/*
* Update pack header with object_count and compute new SHA1 for pack data
* associated to pack_fd, and write that SHA1 at the end. That new SHA1
* is also returned in new_pack_sha1.
*
* If partial_pack_sha1 is non null, then the SHA1 of the existing pack
* (without the header update) is computed and validated against the
* one provided in partial_pack_sha1. The validation is performed at
* partial_pack_offset bytes in the pack file. The SHA1 of the remaining
* data (i.e. from partial_pack_offset to the end) is then computed and
* returned in partial_pack_sha1.
*
* Note that new_pack_sha1 is updated last, so both new_pack_sha1 and
* partial_pack_sha1 can refer to the same buffer if the caller is not
* interested in the resulting SHA1 of pack data above partial_pack_offset.
*/
void fixup_pack_header_footer(int pack_fd,
unsigned char *new_pack_hash,
const char *pack_name,
uint32_t object_count,
unsigned char *partial_pack_hash,
off_t partial_pack_offset)
{
int aligned_sz, buf_sz = 8 * 1024;
git_hash_ctx old_hash_ctx, new_hash_ctx;
struct pack_header hdr;
char *buf;
ssize_t read_result;
the_hash_algo->init_fn(&old_hash_ctx);
the_hash_algo->init_fn(&new_hash_ctx);
if (lseek(pack_fd, 0, SEEK_SET) != 0)
die_errno("Failed seeking to start of '%s'", pack_name);
read_result = read_in_full(pack_fd, &hdr, sizeof(hdr));
if (read_result < 0)
die_errno("Unable to reread header of '%s'", pack_name);
else if (read_result != sizeof(hdr))
die_errno("Unexpected short read for header of '%s'",
pack_name);
if (lseek(pack_fd, 0, SEEK_SET) != 0)
die_errno("Failed seeking to start of '%s'", pack_name);
the_hash_algo->update_fn(&old_hash_ctx, &hdr, sizeof(hdr));
hdr.hdr_entries = htonl(object_count);
the_hash_algo->update_fn(&new_hash_ctx, &hdr, sizeof(hdr));
write_or_die(pack_fd, &hdr, sizeof(hdr));
partial_pack_offset -= sizeof(hdr);
buf = xmalloc(buf_sz);
aligned_sz = buf_sz - sizeof(hdr);
for (;;) {
ssize_t m, n;
m = (partial_pack_hash && partial_pack_offset < aligned_sz) ?
partial_pack_offset : aligned_sz;
n = xread(pack_fd, buf, m);
if (!n)
break;
if (n < 0)
die_errno("Failed to checksum '%s'", pack_name);
the_hash_algo->update_fn(&new_hash_ctx, buf, n);
aligned_sz -= n;
if (!aligned_sz)
aligned_sz = buf_sz;
if (!partial_pack_hash)
continue;
the_hash_algo->update_fn(&old_hash_ctx, buf, n);
partial_pack_offset -= n;
if (partial_pack_offset == 0) {
unsigned char hash[GIT_MAX_RAWSZ];
the_hash_algo->final_fn(hash, &old_hash_ctx);
if (!hasheq(hash, partial_pack_hash))
die("Unexpected checksum for %s "
"(disk corruption?)", pack_name);
/*
* Now let's compute the SHA1 of the remainder of the
* pack, which also means making partial_pack_offset
* big enough not to matter anymore.
*/
the_hash_algo->init_fn(&old_hash_ctx);
partial_pack_offset = ~partial_pack_offset;
partial_pack_offset -= MSB(partial_pack_offset, 1);
}
}
free(buf);
if (partial_pack_hash)
the_hash_algo->final_fn(partial_pack_hash, &old_hash_ctx);
the_hash_algo->final_fn(new_pack_hash, &new_hash_ctx);
write_or_die(pack_fd, new_pack_hash, the_hash_algo->rawsz);
fsync_or_die(pack_fd, pack_name);
}
char *index_pack_lockfile(int ip_out)
{
char packname[GIT_MAX_HEXSZ + 6];
const int len = the_hash_algo->hexsz + 6;
/*
* The first thing we expect from index-pack's output
* is "pack\t%40s\n" or "keep\t%40s\n" (46 bytes) where
* %40s is the newly created pack SHA1 name. In the "keep"
* case, we need it to remove the corresponding .keep file
* later on. If we don't get that then tough luck with it.
*/
if (read_in_full(ip_out, packname, len) == len && packname[len-1] == '\n') {
const char *name;
packname[len-1] = 0;
if (skip_prefix(packname, "keep\t", &name))
return xstrfmt("%s/pack/pack-%s.keep",
get_object_directory(), name);
}
return NULL;
}
/*
* The per-object header is a pretty dense thing, which is
* - first byte: low four bits are "size", then three bits of "type",
* and the high bit is "size continues".
* - each byte afterwards: low seven bits are size continuation,
* with the high bit being "size continues"
*/
int encode_in_pack_object_header(unsigned char *hdr, int hdr_len,
enum object_type type, uintmax_t size)
{
int n = 1;
unsigned char c;
if (type < OBJ_COMMIT || type > OBJ_REF_DELTA)
die("bad type %d", type);
c = (type << 4) | (size & 15);
size >>= 4;
while (size) {
if (n == hdr_len)
die("object size is too enormous to format");
*hdr++ = c | 0x80;
c = size & 0x7f;
size >>= 7;
n++;
}
*hdr = c;
return n;
}
struct hashfile *create_tmp_packfile(char **pack_tmp_name)
{
struct strbuf tmpname = STRBUF_INIT;
int fd;
fd = odb_mkstemp(&tmpname, "pack/tmp_pack_XXXXXX");
*pack_tmp_name = strbuf_detach(&tmpname, NULL);
return hashfd(fd, *pack_tmp_name);
}
void finish_tmp_packfile(struct strbuf *name_buffer,
const char *pack_tmp_name,
struct pack_idx_entry **written_list,
uint32_t nr_written,
struct pack_idx_option *pack_idx_opts,
unsigned char sha1[])
{
const char *idx_tmp_name;
int basename_len = name_buffer->len;
if (adjust_shared_perm(pack_tmp_name))
die_errno("unable to make temporary pack file readable");
idx_tmp_name = write_idx_file(NULL, written_list, nr_written,
pack_idx_opts, sha1);
if (adjust_shared_perm(idx_tmp_name))
die_errno("unable to make temporary index file readable");
strbuf_addf(name_buffer, "%s.pack", sha1_to_hex(sha1));
if (rename(pack_tmp_name, name_buffer->buf))
die_errno("unable to rename temporary pack file");
strbuf_setlen(name_buffer, basename_len);
strbuf_addf(name_buffer, "%s.idx", sha1_to_hex(sha1));
if (rename(idx_tmp_name, name_buffer->buf))
die_errno("unable to rename temporary index file");
strbuf_setlen(name_buffer, basename_len);
free((void *)idx_tmp_name);
}
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