Staging
v0.7.0
v0.7.0
Revision cb99a34e23e32ca8e94bafaa9699cfd133a17fd3 authored by Derrick Stolee on 24 October 2019, 13:40:42 UTC, committed by Junio C Hamano on 25 October 2019, 02:19:16 UTC
The previous commit includes a failing test for an issue around fetch.writeCommitGraph and fetching in a repo with a submodule. Here, we fix that bug and set the test to "test_expect_success". The problem arises with this set of commands when the remote repo at <url> has a submodule. Note that --recurse-submodules is not needed to demonstrate the bug. $ git clone <url> test $ cd test $ git -c fetch.writeCommitGraph=true fetch origin Computing commit graph generation numbers: 100% (12/12), done. BUG: commit-graph.c:886: missing parent <hash1> for commit <hash2> Aborted (core dumped) As an initial fix, I converted the code in builtin/fetch.c that calls write_commit_graph_reachable() to instead launch a "git commit-graph write --reachable --split" process. That code worked, but is not how we want the feature to work long-term. That test did demonstrate that the issue must be something to do with internal state of the 'git fetch' process. The write_commit_graph() method in commit-graph.c ensures the commits we plan to write are "closed under reachability" using close_reachable(). This method walks from the input commits, and uses the UNINTERESTING flag to mark which commits have already been visited. This allows the walk to take O(N) time, where N is the number of commits, instead of O(P) time, where P is the number of paths. (The number of paths can be exponential in the number of commits.) However, the UNINTERESTING flag is used in lots of places in the codebase. This flag usually means some barrier to stop a commit walk, such as in revision-walking to compare histories. It is not often cleared after the walk completes because the starting points of those walks do not have the UNINTERESTING flag, and clear_commit_marks() would stop immediately. This is happening during a 'git fetch' call with a remote. The fetch negotiation is comparing the remote refs with the local refs and marking some commits as UNINTERESTING. I tested running clear_commit_marks_many() to clear the UNINTERESTING flag inside close_reachable(), but the tips did not have the flag, so that did nothing. It turns out that the calculate_changed_submodule_paths() method is at fault. Thanks, Peff, for pointing out this detail! More specifically, for each submodule, the collect_changed_submodules() runs a revision walk to essentially do file-history on the list of submodules. That revision walk marks commits UNININTERESTING if they are simplified away by not changing the submodule. Instead, I finally arrived on the conclusion that I should use a flag that is not used in any other part of the code. In commit-reach.c, a number of flags were defined for commit walk algorithms. The REACHABLE flag seemed like it made the most sense, and it seems it was not actually used in the file. The REACHABLE flag was used in early versions of commit-reach.c, but was removed by 4fbcca4 (commit-reach: make can_all_from_reach... linear, 2018-07-20). Add the REACHABLE flag to commit-graph.c and use it instead of UNINTERESTING in close_reachable(). This fixes the bug in manual testing. Reported-by: Johannes Schindelin <johannes.schindelin@gmx.de> Helped-by: Jeff King <peff@peff.net> Helped-by: Szeder Gábor <szeder.dev@gmail.com> Signed-off-by: Derrick Stolee <dstolee@microsoft.com> Signed-off-by: Junio C Hamano <gitster@pobox.com>
1 parent e88aab9
pack-bitmap-write.c
#include "cache.h"
#include "object-store.h"
#include "commit.h"
#include "tag.h"
#include "diff.h"
#include "revision.h"
#include "list-objects.h"
#include "progress.h"
#include "pack-revindex.h"
#include "pack.h"
#include "pack-bitmap.h"
#include "sha1-lookup.h"
#include "pack-objects.h"
#include "commit-reach.h"
struct bitmapped_commit {
struct commit *commit;
struct ewah_bitmap *bitmap;
struct ewah_bitmap *write_as;
int flags;
int xor_offset;
uint32_t commit_pos;
};
struct bitmap_writer {
struct ewah_bitmap *commits;
struct ewah_bitmap *trees;
struct ewah_bitmap *blobs;
struct ewah_bitmap *tags;
kh_oid_map_t *bitmaps;
kh_oid_map_t *reused;
struct packing_data *to_pack;
struct bitmapped_commit *selected;
unsigned int selected_nr, selected_alloc;
struct progress *progress;
int show_progress;
unsigned char pack_checksum[GIT_MAX_RAWSZ];
};
static struct bitmap_writer writer;
void bitmap_writer_show_progress(int show)
{
writer.show_progress = show;
}
/**
* Build the initial type index for the packfile
*/
void bitmap_writer_build_type_index(struct packing_data *to_pack,
struct pack_idx_entry **index,
uint32_t index_nr)
{
uint32_t i;
writer.commits = ewah_new();
writer.trees = ewah_new();
writer.blobs = ewah_new();
writer.tags = ewah_new();
ALLOC_ARRAY(to_pack->in_pack_pos, to_pack->nr_objects);
for (i = 0; i < index_nr; ++i) {
struct object_entry *entry = (struct object_entry *)index[i];
enum object_type real_type;
oe_set_in_pack_pos(to_pack, entry, i);
switch (oe_type(entry)) {
case OBJ_COMMIT:
case OBJ_TREE:
case OBJ_BLOB:
case OBJ_TAG:
real_type = oe_type(entry);
break;
default:
real_type = oid_object_info(to_pack->repo,
&entry->idx.oid, NULL);
break;
}
switch (real_type) {
case OBJ_COMMIT:
ewah_set(writer.commits, i);
break;
case OBJ_TREE:
ewah_set(writer.trees, i);
break;
case OBJ_BLOB:
ewah_set(writer.blobs, i);
break;
case OBJ_TAG:
ewah_set(writer.tags, i);
break;
default:
die("Missing type information for %s (%d/%d)",
oid_to_hex(&entry->idx.oid), real_type,
oe_type(entry));
}
}
}
/**
* Compute the actual bitmaps
*/
static struct object **seen_objects;
static unsigned int seen_objects_nr, seen_objects_alloc;
static inline void push_bitmapped_commit(struct commit *commit, struct ewah_bitmap *reused)
{
if (writer.selected_nr >= writer.selected_alloc) {
writer.selected_alloc = (writer.selected_alloc + 32) * 2;
REALLOC_ARRAY(writer.selected, writer.selected_alloc);
}
writer.selected[writer.selected_nr].commit = commit;
writer.selected[writer.selected_nr].bitmap = reused;
writer.selected[writer.selected_nr].flags = 0;
writer.selected_nr++;
}
static inline void mark_as_seen(struct object *object)
{
ALLOC_GROW(seen_objects, seen_objects_nr + 1, seen_objects_alloc);
seen_objects[seen_objects_nr++] = object;
}
static inline void reset_all_seen(void)
{
unsigned int i;
for (i = 0; i < seen_objects_nr; ++i) {
seen_objects[i]->flags &= ~(SEEN | ADDED | SHOWN);
}
seen_objects_nr = 0;
}
static uint32_t find_object_pos(const struct object_id *oid)
{
struct object_entry *entry = packlist_find(writer.to_pack, oid, NULL);
if (!entry) {
die("Failed to write bitmap index. Packfile doesn't have full closure "
"(object %s is missing)", oid_to_hex(oid));
}
return oe_in_pack_pos(writer.to_pack, entry);
}
static void show_object(struct object *object, const char *name, void *data)
{
struct bitmap *base = data;
bitmap_set(base, find_object_pos(&object->oid));
mark_as_seen(object);
}
static void show_commit(struct commit *commit, void *data)
{
mark_as_seen((struct object *)commit);
}
static int
add_to_include_set(struct bitmap *base, struct commit *commit)
{
khiter_t hash_pos;
uint32_t bitmap_pos = find_object_pos(&commit->object.oid);
if (bitmap_get(base, bitmap_pos))
return 0;
hash_pos = kh_get_oid_map(writer.bitmaps, commit->object.oid);
if (hash_pos < kh_end(writer.bitmaps)) {
struct bitmapped_commit *bc = kh_value(writer.bitmaps, hash_pos);
bitmap_or_ewah(base, bc->bitmap);
return 0;
}
bitmap_set(base, bitmap_pos);
return 1;
}
static int
should_include(struct commit *commit, void *_data)
{
struct bitmap *base = _data;
if (!add_to_include_set(base, commit)) {
struct commit_list *parent = commit->parents;
mark_as_seen((struct object *)commit);
while (parent) {
parent->item->object.flags |= SEEN;
mark_as_seen((struct object *)parent->item);
parent = parent->next;
}
return 0;
}
return 1;
}
static void compute_xor_offsets(void)
{
static const int MAX_XOR_OFFSET_SEARCH = 10;
int i, next = 0;
while (next < writer.selected_nr) {
struct bitmapped_commit *stored = &writer.selected[next];
int best_offset = 0;
struct ewah_bitmap *best_bitmap = stored->bitmap;
struct ewah_bitmap *test_xor;
for (i = 1; i <= MAX_XOR_OFFSET_SEARCH; ++i) {
int curr = next - i;
if (curr < 0)
break;
test_xor = ewah_pool_new();
ewah_xor(writer.selected[curr].bitmap, stored->bitmap, test_xor);
if (test_xor->buffer_size < best_bitmap->buffer_size) {
if (best_bitmap != stored->bitmap)
ewah_pool_free(best_bitmap);
best_bitmap = test_xor;
best_offset = i;
} else {
ewah_pool_free(test_xor);
}
}
stored->xor_offset = best_offset;
stored->write_as = best_bitmap;
next++;
}
}
void bitmap_writer_build(struct packing_data *to_pack)
{
static const double REUSE_BITMAP_THRESHOLD = 0.2;
int i, reuse_after, need_reset;
struct bitmap *base = bitmap_new();
struct rev_info revs;
writer.bitmaps = kh_init_oid_map();
writer.to_pack = to_pack;
if (writer.show_progress)
writer.progress = start_progress("Building bitmaps", writer.selected_nr);
repo_init_revisions(to_pack->repo, &revs, NULL);
revs.tag_objects = 1;
revs.tree_objects = 1;
revs.blob_objects = 1;
revs.no_walk = 0;
revs.include_check = should_include;
reset_revision_walk();
reuse_after = writer.selected_nr * REUSE_BITMAP_THRESHOLD;
need_reset = 0;
for (i = writer.selected_nr - 1; i >= 0; --i) {
struct bitmapped_commit *stored;
struct object *object;
khiter_t hash_pos;
int hash_ret;
stored = &writer.selected[i];
object = (struct object *)stored->commit;
if (stored->bitmap == NULL) {
if (i < writer.selected_nr - 1 &&
(need_reset ||
!in_merge_bases(writer.selected[i + 1].commit,
stored->commit))) {
bitmap_reset(base);
reset_all_seen();
}
add_pending_object(&revs, object, "");
revs.include_check_data = base;
if (prepare_revision_walk(&revs))
die("revision walk setup failed");
traverse_commit_list(&revs, show_commit, show_object, base);
object_array_clear(&revs.pending);
stored->bitmap = bitmap_to_ewah(base);
need_reset = 0;
} else
need_reset = 1;
if (i >= reuse_after)
stored->flags |= BITMAP_FLAG_REUSE;
hash_pos = kh_put_oid_map(writer.bitmaps, object->oid, &hash_ret);
if (hash_ret == 0)
die("Duplicate entry when writing index: %s",
oid_to_hex(&object->oid));
kh_value(writer.bitmaps, hash_pos) = stored;
display_progress(writer.progress, writer.selected_nr - i);
}
bitmap_free(base);
stop_progress(&writer.progress);
compute_xor_offsets();
}
/**
* Select the commits that will be bitmapped
*/
static inline unsigned int next_commit_index(unsigned int idx)
{
static const unsigned int MIN_COMMITS = 100;
static const unsigned int MAX_COMMITS = 5000;
static const unsigned int MUST_REGION = 100;
static const unsigned int MIN_REGION = 20000;
unsigned int offset, next;
if (idx <= MUST_REGION)
return 0;
if (idx <= MIN_REGION) {
offset = idx - MUST_REGION;
return (offset < MIN_COMMITS) ? offset : MIN_COMMITS;
}
offset = idx - MIN_REGION;
next = (offset < MAX_COMMITS) ? offset : MAX_COMMITS;
return (next > MIN_COMMITS) ? next : MIN_COMMITS;
}
static int date_compare(const void *_a, const void *_b)
{
struct commit *a = *(struct commit **)_a;
struct commit *b = *(struct commit **)_b;
return (long)b->date - (long)a->date;
}
void bitmap_writer_reuse_bitmaps(struct packing_data *to_pack)
{
struct bitmap_index *bitmap_git;
if (!(bitmap_git = prepare_bitmap_git(to_pack->repo)))
return;
writer.reused = kh_init_oid_map();
rebuild_existing_bitmaps(bitmap_git, to_pack, writer.reused,
writer.show_progress);
/*
* NEEDSWORK: rebuild_existing_bitmaps() makes writer.reused reference
* some bitmaps in bitmap_git, so we can't free the latter.
*/
}
static struct ewah_bitmap *find_reused_bitmap(const struct object_id *oid)
{
khiter_t hash_pos;
if (!writer.reused)
return NULL;
hash_pos = kh_get_oid_map(writer.reused, *oid);
if (hash_pos >= kh_end(writer.reused))
return NULL;
return kh_value(writer.reused, hash_pos);
}
void bitmap_writer_select_commits(struct commit **indexed_commits,
unsigned int indexed_commits_nr,
int max_bitmaps)
{
unsigned int i = 0, j, next;
QSORT(indexed_commits, indexed_commits_nr, date_compare);
if (writer.show_progress)
writer.progress = start_progress("Selecting bitmap commits", 0);
if (indexed_commits_nr < 100) {
for (i = 0; i < indexed_commits_nr; ++i)
push_bitmapped_commit(indexed_commits[i], NULL);
return;
}
for (;;) {
struct ewah_bitmap *reused_bitmap = NULL;
struct commit *chosen = NULL;
next = next_commit_index(i);
if (i + next >= indexed_commits_nr)
break;
if (max_bitmaps > 0 && writer.selected_nr >= max_bitmaps) {
writer.selected_nr = max_bitmaps;
break;
}
if (next == 0) {
chosen = indexed_commits[i];
reused_bitmap = find_reused_bitmap(&chosen->object.oid);
} else {
chosen = indexed_commits[i + next];
for (j = 0; j <= next; ++j) {
struct commit *cm = indexed_commits[i + j];
reused_bitmap = find_reused_bitmap(&cm->object.oid);
if (reused_bitmap || (cm->object.flags & NEEDS_BITMAP) != 0) {
chosen = cm;
break;
}
if (cm->parents && cm->parents->next)
chosen = cm;
}
}
push_bitmapped_commit(chosen, reused_bitmap);
i += next + 1;
display_progress(writer.progress, i);
}
stop_progress(&writer.progress);
}
static int hashwrite_ewah_helper(void *f, const void *buf, size_t len)
{
/* hashwrite will die on error */
hashwrite(f, buf, len);
return len;
}
/**
* Write the bitmap index to disk
*/
static inline void dump_bitmap(struct hashfile *f, struct ewah_bitmap *bitmap)
{
if (ewah_serialize_to(bitmap, hashwrite_ewah_helper, f) < 0)
die("Failed to write bitmap index");
}
static const unsigned char *sha1_access(size_t pos, void *table)
{
struct pack_idx_entry **index = table;
return index[pos]->oid.hash;
}
static void write_selected_commits_v1(struct hashfile *f,
struct pack_idx_entry **index,
uint32_t index_nr)
{
int i;
for (i = 0; i < writer.selected_nr; ++i) {
struct bitmapped_commit *stored = &writer.selected[i];
int commit_pos =
sha1_pos(stored->commit->object.oid.hash, index, index_nr, sha1_access);
if (commit_pos < 0)
BUG("trying to write commit not in index");
hashwrite_be32(f, commit_pos);
hashwrite_u8(f, stored->xor_offset);
hashwrite_u8(f, stored->flags);
dump_bitmap(f, stored->write_as);
}
}
static void write_hash_cache(struct hashfile *f,
struct pack_idx_entry **index,
uint32_t index_nr)
{
uint32_t i;
for (i = 0; i < index_nr; ++i) {
struct object_entry *entry = (struct object_entry *)index[i];
uint32_t hash_value = htonl(entry->hash);
hashwrite(f, &hash_value, sizeof(hash_value));
}
}
void bitmap_writer_set_checksum(unsigned char *sha1)
{
hashcpy(writer.pack_checksum, sha1);
}
void bitmap_writer_finish(struct pack_idx_entry **index,
uint32_t index_nr,
const char *filename,
uint16_t options)
{
static uint16_t default_version = 1;
static uint16_t flags = BITMAP_OPT_FULL_DAG;
struct strbuf tmp_file = STRBUF_INIT;
struct hashfile *f;
struct bitmap_disk_header header;
int fd = odb_mkstemp(&tmp_file, "pack/tmp_bitmap_XXXXXX");
f = hashfd(fd, tmp_file.buf);
memcpy(header.magic, BITMAP_IDX_SIGNATURE, sizeof(BITMAP_IDX_SIGNATURE));
header.version = htons(default_version);
header.options = htons(flags | options);
header.entry_count = htonl(writer.selected_nr);
hashcpy(header.checksum, writer.pack_checksum);
hashwrite(f, &header, sizeof(header) - GIT_MAX_RAWSZ + the_hash_algo->rawsz);
dump_bitmap(f, writer.commits);
dump_bitmap(f, writer.trees);
dump_bitmap(f, writer.blobs);
dump_bitmap(f, writer.tags);
write_selected_commits_v1(f, index, index_nr);
if (options & BITMAP_OPT_HASH_CACHE)
write_hash_cache(f, index, index_nr);
finalize_hashfile(f, NULL, CSUM_HASH_IN_STREAM | CSUM_FSYNC | CSUM_CLOSE);
if (adjust_shared_perm(tmp_file.buf))
die_errno("unable to make temporary bitmap file readable");
if (rename(tmp_file.buf, filename))
die_errno("unable to rename temporary bitmap file to '%s'", filename);
strbuf_release(&tmp_file);
}
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